PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024143-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 510aa    MW: 53681.1 Da    PI: 8.3267
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024143-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056688123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   ++C++C+k F r  nL+ H r H
  NNU_024143-RA 66 FVCEICNKGFQRDQNLQLHRRGH 88
                   89*******************88 PP

2zf-C2H212.10.0006142164123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H +t+
  NNU_024143-RA 142 WKCDKCSKKYAVQSDWKAHSKTC 164
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.9E-76588No hitNo description
Gene3DG3DSA:3.30.160.601.7E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.9496688IPR007087Zinc finger, C2H2
SMARTSM003550.0176688IPR015880Zinc finger, C2H2-like
PfamPF121718.2E-56688IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM00355250107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.3E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.9E-7137162No hitNo description
SMARTSM00355150142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    Send to blast
MPVELENTSA VTVSTASAEA SASSSGNQAA PPSTTIKKKR NLPGTPDPEA EVIALSPKTL  60
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSSK EVRKRVYVCP ETSCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  180
DSFITHRAFC DALAEESARA QTVPNSNSEE DPKLPIVTTT PPPASSAVVS MALPIQNPEL  240
PENSTGILNH SSPATCLNGN SSTSSSNGSS SSSVFASLFV STAAPGNLQP QTSTFSELIC  300
AMARSERSTS LSSASALEPT SLCLSSNNGS SLFAQTGAER RQYAPPPQPA MSATALLQKA  360
AQMGATASNA SLLRGLGITV SSSSGQQENL RWDQRMEGEA APLAAGLGLG LPSEGSNGLT  420
ELMMGQSSMF GPKPTTLDLL GLGMGGGGSP TGRLSTLITS IGDGLDVAAA AASFGGGGNS  480
SGETWEEASE RKTNSPPTEK PPNVYLASLN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244313.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_010244314.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9LVQ71e-172IDD1_ARATH; Protein indeterminate-domain 1
TrEMBLF6GWY30.0F6GWY3_VITVI; Putative uncharacterized protein
STRINGVIT_04s0023g01430.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-110indeterminate(ID)-domain 2